James Fishbaugh
Research Assistant Professor
Computer Science and Engineering Department
NYU Tandon School of Engineering

Email:
james.fishbaugh@nyu.edu
Office:
2 MetroTech Center, 10.039

Education

Ph.D. in Computing: Image Analysis
2008-2015
University of Utah

M.S. in Computer Science

2006-2008
University of Montana

B.S. in Computer Science

2002-2006
University of Montana

Publications

Vicory, J., Pascal, L., Fishbaugh, J., Prieto, J., Mostafa, M., Huang, C., Shah, H., Hong, J., Liu, Z., Michoud, L., Fillion-Robin, JC., Gerig, G., Zhu, H., Pizer, S., Styner, M., Paniagua, B. SlicerSALT: Shape AnaLysis Toolbox. MICCAI Workshop on Shape in Medical Imaging (ShapeMI '18). (To appear) (2018)

Hong, S., Fishbaugh, J., Gerig, G. 4D Continuous Medial Representation Trajectory Estimation for Longitudinal Shape Analysis. MICCAI Workshop on Shape in Medical Imaging (ShapeMI '18). (To appear) (2018)

Ravier, M., Hong, S., Girot, C., Ishikawa, H., Tauber, J., Wollstein, G., Schuman, J., Fishbaugh, J., Gerig, G. Analysis of morphological changes of lamina cribrosa under acute intraocular pressure change. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '18). (To appear) (2018)

Paniagua, B., Linguraru, M. G., Cevidanes, L., McCormick, M., Fillion-Robin, JC., Fishbaugh, J., Gerig, G., Enquobahrie, A. Pediatric craniofacial image analysis: A software perspective. IEEE Engineering in Medicine and Biology Society (EMBC '18). (To appear) (2018)

Ravier, M., Hong, S., Ishikawa, H., Girot, C., Tauber, J., Wollstein, G., Schuman, J., Fishbaugh, J., Gerig, G. 3D analysis of structural changes of the lamina cribrosa under intraocular pressure on swept source OCT images. ARVO Imaging in the Eye (ARVO '18). (To appear) (2018)

Fishbaugh, J., Hong, S., Ishikawa, H., Ravier, M., Wollstein, G., Schuman, J., Gerig, G. Stability analysis of lamina cribrosa structure in repeated optical coherence tomography scans. Investigative Ophthalmology & Visual Science (ARVO '18). Vol 59(9). pp 2103. (2018)

Hong, S., Ravier, M., Ishikawa, H., Girot, C., Tauber, J., Wollstein, G., Schuman, J., Fishbaugh, J., Gerig, G. Groupwise 3D nonlinear registration of OCT image series for analyzing dynamic lamina cribrosa changes. Investigative Ophthalmology & Visual Science (ARVO '18). Vol 59(9). pp 1682. (2018)

Fishbaugh, J., Pascal, L., Fischer, L., Nguyen, T., Boen, C., Goncalves, J., Gerig, G., Paniagua, B. Estimating shape correspondences for populations of objects with complex topology. IEEE International Symposium on Biomedical Imaging (ISBI '18). pp 1010-1013. (2018)

Hong, S., Fishbaugh, J., Gerig, G. 4D continuous medial representation by geodesic shape regression. IEEE International Symposium on Biomedical Imaging (ISBI '18). pp 1014-1017. (2018)

Girot, C., Ishikawa, H., Fishbaugh, J., Wollstein, G., Schuman, JS., Gerig, G. Spatiotemporal analysis of structural changes of the lamina cribrosa. Proc. of the Ophthalmic Medical Image Analysis Fourth International Workshop (MICCAI-OMIA '17). pp 185-193. (2017)

Fishbaugh, J., Prastawa, M., Wang, B., Reynolds, P., Aylward, S., Gerig, G. Data-driven rank aggregation with application to grand challenges. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '17). Vol 10434. pp 754-762. (2017)

Vardhan, A., Fishbaugh, J, Vachet, C., Gerig, G. Longitudinal modeling of multi-modal image contrast reveals patterns of early brain growth. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '17). Vol 10433. pp 75-83. (2017)

Fishbaugh, J., Durrleman, S., Prastawa, M., Gerig, G. Geodesic shape regression with multiple geometries and sparse parameters. Medical Image Analysis. Vol 39. pp. 1-17. (2017)

Hong, S., Fishbaugh, J., Rezanejad, M., Siddiqi, K., Johnson, H., Paulsen, J., Kim, EY., Gerig, G. Subject-specific longitudinal shape analysis by coupling spatiotemporal shape modeling with medial analysis. SPIE Medical Imaging 2017: Image Processing. (2017) (Oral presentation by Sungmin Hong)

Fishbaugh, J., Paniagua, B., Boen, V., Cevidanes, L.H., Gerig, G. Continuous 4D shape analysis of mandibular changes. Meeting of the International Association for Dental Research (IADR). (2017) (Oral presentation by Beatriz Paniagua)

Gerig, G., Fishbaugh, J., Sadeghi, N. Longitudinal modeling of appearance and shape and its potential for clinical use. Medical Image Analysis. Vol 33. pp 114-121. (2016)

Muralidharan, P., Fishbaugh, J., Kim, EY., Johnson, H., Paulsen, J., Gerig, G., Fletcher, P.T. Bayesian covariate selection in mixed-effects models for longitudinal shape analysis. IEEE International Symposium on Biomedical Imaging (ISBI '16). pp. 656-659. (2016) (Oral presentation by Prasanna Muralidharan)

Fishbaugh, J., Gerig, G.
Spatiotemporal modeling of dynamic facial expressions. In Proceedings of Shape Symposium. pp. 3. Delemont, Switzerland. (2015) (Oral presentation)

Muralidharan, P., Fishbaugh, J., Johnson, H., Durrleman, S., Paulsen, J., Gerig, G., Fletcher, P.T. Diffeomorphic shape trajectories for improved longitudinal segmentation and statistics. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '14). Vol 8675. (2014)

Fishbaugh, J., Prastawa, M., Gerig, G., Durrleman, S. Geodesic regression of image and shape data for improved modeling of 4D trajectories. IEEE International Symposium on Biomedical Imaging (ISBI '14). pp. 385-388. (2014)

Fishbaugh, J., Prastawa, M., Gerig, G., Durrleman, S. Geodesic image regression with a sparse parameterization of diffeomorphisms. Geometric Science of Information (GSI '13). LNCS vol 8085, pp. 95-102. (2013) (Oral presentation)

Fishbaugh, J., Prastawa, M., Gerig, G., Durrleman, S. Geodesic shape regression in the framework of currents. Proc. of Information Processing in Medical Imaging (IPMI '13). Vol 23, pp. 718-729. (2013)

Paniagua, B., Emodi, O., Hill, J., Fishbaugh, J., Pimenta, L., Aylward, S., Andinet, E., Gerig, G., Gilmore, J., Van Aalst, J., Styner, M. 3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants. SPIE Medical Imaging 2013: Biomedical Applications in Molecular, Structural, and Functional Imaging. Vol 8672. (2013)

Fishbaugh, J., Prastawa, M., Durrleman, S., Piven, J., Gerig, G. Analysis of longitudinal shape variability via subject specific growth modeling. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '12). Vol 7510, pp. 731-738. (2012) (Oral presentation)

Fishbaugh, J., Durrleman, S., Piven, J., Gerig, G. A framework for longitudinal data analysis via shape regression. SPIE Medical Imaging 2012: Image Processing. Vol. 8314. (2012)

Fishbaugh, J., Durrleman, S., Gerig, G. Estimation of smooth growth trajectories with controlled acceleration from time series shape data. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '11). Vol 6892, pp. 401-408. (2011)


Misc

Fishbaugh, J., Gerig, G. 4D shape modeling of medical images and anatomical shapes. Poster presented as part of the NYU Postdoctoral Interdisciplinary Symposium. New York University. 14 November 2016. (Outstanding poster award)

Fishbaugh, J., Johnson, J. Development of a higher-order ice sheet model using a rescaled coordinate system. Poster presented as part of the Graduate Student and Faculty Research Conference. University of Montana. 5 April 2008. (Outstanding poster award)

PhD thesis

Fishbaugh, J. Spatiotemporal modeling of anatomical shape complexes. The University of Utah. (2015)

Master's thesis

Fishbaugh, J. Development of a higher-order ice sheet model using a rescaled coordinate system. The University of Montana. (2008)


Last Updated: August 29, 2018